install error linux centos7
- fsteinmetz
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Re: install error linux centos7
Dear Binbin,
For more information about how to run the code, you can have a look at section 2.1 of README.md, and also in example.py at the root of the polymer distribution.
Cheers,
François
For more information about how to run the code, you can have a look at section 2.1 of README.md, and also in example.py at the root of the polymer distribution.
Cheers,
François
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Re: install error linux centos7
Dear fsteinmetz;
when i run this code' python ./polymer_cli.py '/home/bjiang/Sentinel2/ningde20180807/GRANULE/L1C_T50RQQ_A007408_20180807T024116' result.nc'
get error below, please help me. Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/ningde20180807/GRANULE/L1C_T50RQQ_A007408_20180807T024116' result.nc
Starting processing at 2020-08-04 09:56:38.214733
Initialize MSI projection EPSG:32650
/home/bjiang/.conda/envs/binbin1/lib/python3.7/site-packages/pyproj/crs/crs.py:280: FutureWarning: '+init=<authority>:<code>' syntax is deprecated. '<authority>:<code>' is the preferred initialization method. When making the change, be mindful of axis order changes: https://pyproj4.github.io/pyproj/stable ... -in-proj-6
projstring = _prepare_from_string(projparams)
Trying to download https://oceandata.sci.gsfc.nasa.gov/cgi ... MI_24h.hdf ...
Cannot open cookies file ‘/home/bjiang/.urs_cookies’: No such file or directory
2020-08-04 09:56:52 URL:https://urs.earthdata.nasa.gov/oauth/au ... 2Frestrict [12671] -> "ANCILLARY/METEO/2018/219/N201821900_O3_AURAOMI_24h.hdf.tmp" [1]
Traceback (most recent call last):
File "./polymer_cli.py", line 35, in <module>
Level2(filename=args.output_file, fmt=args.fmt))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 496, in run_atm_corr
with level2 as l2, level1 as l1:
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 106, in __enter__
self.level1 = L1(self.filename, **self.kwargs)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 151, in __init__
self.init_ancillary()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 180, in init_ancillary
self.ozone = self.ancillary.get('ozone', self.date)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 242, in get
res = self.find_ozone(date)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 369, in find_ozone
f1 = self.try_resources(self.ozone_patterns, rolling(t0, self.delta, timedelta(days=1)))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 340, in try_resources
ret = self.download(url, target)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 306, in download
assert not fp.read(100).startswith(b'<!DOCTYPE html>'), errormsg
AssertionError: Error authenticating to NASA EarthData for downloading ancillary data. Please provide authentication through .netrc. See more information on https://support.earthdata.nasa.gov/inde ... l-and-wget
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
when i run this code' python ./polymer_cli.py '/home/bjiang/Sentinel2/ningde20180807/GRANULE/L1C_T50RQQ_A007408_20180807T024116' result.nc'
get error below, please help me. Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/ningde20180807/GRANULE/L1C_T50RQQ_A007408_20180807T024116' result.nc
Starting processing at 2020-08-04 09:56:38.214733
Initialize MSI projection EPSG:32650
/home/bjiang/.conda/envs/binbin1/lib/python3.7/site-packages/pyproj/crs/crs.py:280: FutureWarning: '+init=<authority>:<code>' syntax is deprecated. '<authority>:<code>' is the preferred initialization method. When making the change, be mindful of axis order changes: https://pyproj4.github.io/pyproj/stable ... -in-proj-6
projstring = _prepare_from_string(projparams)
Trying to download https://oceandata.sci.gsfc.nasa.gov/cgi ... MI_24h.hdf ...
Cannot open cookies file ‘/home/bjiang/.urs_cookies’: No such file or directory
2020-08-04 09:56:52 URL:https://urs.earthdata.nasa.gov/oauth/au ... 2Frestrict [12671] -> "ANCILLARY/METEO/2018/219/N201821900_O3_AURAOMI_24h.hdf.tmp" [1]
Traceback (most recent call last):
File "./polymer_cli.py", line 35, in <module>
Level2(filename=args.output_file, fmt=args.fmt))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 496, in run_atm_corr
with level2 as l2, level1 as l1:
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 106, in __enter__
self.level1 = L1(self.filename, **self.kwargs)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 151, in __init__
self.init_ancillary()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 180, in init_ancillary
self.ozone = self.ancillary.get('ozone', self.date)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 242, in get
res = self.find_ozone(date)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 369, in find_ozone
f1 = self.try_resources(self.ozone_patterns, rolling(t0, self.delta, timedelta(days=1)))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 340, in try_resources
ret = self.download(url, target)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/ancillary.py", line 306, in download
assert not fp.read(100).startswith(b'<!DOCTYPE html>'), errormsg
AssertionError: Error authenticating to NASA EarthData for downloading ancillary data. Please provide authentication through .netrc. See more information on https://support.earthdata.nasa.gov/inde ... l-and-wget
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
- fsteinmetz
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Re: install error linux centos7
Dear Binbin,
You need to provide credentials to NASA EarthData to access ancillary data.
As mentioned in the error message:
Error authenticating to NASA EarthData for downloading ancillary data. Please provide authentication through .netrc. See more information on https://support.earthdata.nasa.gov/inde ... l-and-wget
Cheers,
François
You need to provide credentials to NASA EarthData to access ancillary data.
As mentioned in the error message:
Error authenticating to NASA EarthData for downloading ancillary data. Please provide authentication through .netrc. See more information on https://support.earthdata.nasa.gov/inde ... l-and-wget
Cheers,
François
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- Posts: 45
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- company / institution: university of maine
- Location: maine
Re: install error linux centos7
Dear steinmetz,
when I finish the login the NASA Earthdata, it still error. I do not know how to deal with it. could you help me? thanks. the code is below.
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04/IMG_DATA' 20160912.nc
Starting processing at 2020-08-20 10:40:46.681536
Initialize MSI projection EPSG:32619
/home/bjiang/.conda/envs/binbin1/lib/python3.7/site-packages/pyproj/crs/crs.py:280: FutureWarning: '+init=<authority>:<code>' syntax is deprecated. '<authority>:<code>' is the preferred initialization method. When making the change, be mindful of axis order changes: https://pyproj4.github.io/pyproj/stable ... -in-proj-6
projstring = _prepare_from_string(projparams)
Initializing output file "20160912.nc"
Traceback (most recent call last):
File "./polymer_cli.py", line 35, in <module>
Level2(filename=args.output_file, fmt=args.fmt))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 517, in run_atm_corr
for block in block_iter:
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 434, in blockiterator
for block in level1.blocks(params.bands_read()):
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 401, in blocks
yield self.read_block(size, offset, bands_read)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 332, in read_block
raw_data = self.read_TOA(band, size, offset)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 272, in read_TOA
jp = Jp2k(self.get_filename(band))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 262, in get_filename
assert len(filenames) == 1
AssertionError
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
when I finish the login the NASA Earthdata, it still error. I do not know how to deal with it. could you help me? thanks. the code is below.
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04/IMG_DATA' 20160912.nc
Starting processing at 2020-08-20 10:40:46.681536
Initialize MSI projection EPSG:32619
/home/bjiang/.conda/envs/binbin1/lib/python3.7/site-packages/pyproj/crs/crs.py:280: FutureWarning: '+init=<authority>:<code>' syntax is deprecated. '<authority>:<code>' is the preferred initialization method. When making the change, be mindful of axis order changes: https://pyproj4.github.io/pyproj/stable ... -in-proj-6
projstring = _prepare_from_string(projparams)
Initializing output file "20160912.nc"
Traceback (most recent call last):
File "./polymer_cli.py", line 35, in <module>
Level2(filename=args.output_file, fmt=args.fmt))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 517, in run_atm_corr
for block in block_iter:
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/main.py", line 434, in blockiterator
for block in level1.blocks(params.bands_read()):
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 401, in blocks
yield self.read_block(size, offset, bands_read)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 332, in read_block
raw_data = self.read_TOA(band, size, offset)
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 272, in read_TOA
jp = Jp2k(self.get_filename(band))
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1_msi.py", line 262, in get_filename
assert len(filenames) == 1
AssertionError
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
- fsteinmetz
- Site Admin
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Re: install error linux centos7
Dear Binbin,
You need to provide the granule directory like "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04" , not IMG_DATA.
Please see section 2.3.4 of the README.
Cheers,
François
You need to provide the granule directory like "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04" , not IMG_DATA.
Please see section 2.3.4 of the README.
Cheers,
François
-
- Posts: 45
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
Dear fsteinmetz,
Thank you for reply. I follow your suggest, it still not work. Could you help me, Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04' /home/bjiang/20160912.nc
Traceback (most recent call last):
File "./polymer_cli.py", line 34, in <module>
run_atm_corr(Level1(args.input_file),
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 36, in __init__
self.autodetect()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 61, in autodetect
raise Exception('Unable to detect sensor for file "{}"'.format(b))
Exception: Unable to detect sensor for file "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04"
Thank you for reply. I follow your suggest, it still not work. Could you help me, Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04' /home/bjiang/20160912.nc
Traceback (most recent call last):
File "./polymer_cli.py", line 34, in <module>
run_atm_corr(Level1(args.input_file),
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 36, in __init__
self.autodetect()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 61, in autodetect
raise Exception('Unable to detect sensor for file "{}"'.format(b))
Exception: Unable to detect sensor for file "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04"
-
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Re: install error linux centos7
Dear
i fix it. it works. thank you for your help.
Best
Binbin
i fix it. it works. thank you for your help.
Best
Binbin
-
- Posts: 45
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
Dear fsteinmetz,
when I without '' resolution=20''. it works. but I add the code it not works. could you help me? Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04',resolution='20' /home/bjiang/20160912.nc
Traceback (most recent call last):
File "./polymer_cli.py", line 34, in <module>
run_atm_corr(Level1(args.input_file),
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 36, in __init__
self.autodetect()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 61, in autodetect
raise Exception('Unable to detect sensor for file "{}"'.format(b))
Exception: Unable to detect sensor for file "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04,resolution=20"
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
when I without '' resolution=20''. it works. but I add the code it not works. could you help me? Thanks
Best
Binbin
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% python ./polymer_cli.py '/home/bjiang/Sentinel2/20160912midmaine/GRANULE/S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04',resolution='20' /home/bjiang/20160912.nc
Traceback (most recent call last):
File "./polymer_cli.py", line 34, in <module>
run_atm_corr(Level1(args.input_file),
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 36, in __init__
self.autodetect()
File "/nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/level1.py", line 61, in autodetect
raise Exception('Unable to detect sensor for file "{}"'.format(b))
Exception: Unable to detect sensor for file "S2A_OPER_MSI_L1C_TL_SGS__20160912T204513_A006400_T19TDJ_N02.04,resolution=20"
(binbin1) [bjiang@viz3]~/software/pythondepen/polymer-v4.13%
- fsteinmetz
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Re: install error linux centos7
There is a quotation mark error, the argument must be provided outside of the string.
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Re: install error linux centos7
Dear fsteinmetz,
Thank you for your reply. i do not know understand how could fix it. could you say more clear. thanks
Best
Binbin
Thank you for your reply. i do not know understand how could fix it. could you say more clear. thanks
Best
Binbin