install error linux centos7
-
- Posts: 44
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
install error linux centos7
Dear anyone who knows the answer
bash install-anaconda-deps.sh
Make auxdata all
these code all work.
but when i make
the error code:
collect2: error:ld returned 1 exit status
error:command'gcc' failed with exit status 1
make *** [makefile:9 :main] Error 1
Thank you
Best wishes
Binbin
bash install-anaconda-deps.sh
Make auxdata all
these code all work.
but when i make
the error code:
collect2: error:ld returned 1 exit status
error:command'gcc' failed with exit status 1
make *** [makefile:9 :main] Error 1
Thank you
Best wishes
Binbin
- fsteinmetz
- Site Admin
- Posts: 306
- Joined: Fri Sep 07, 2018 1:34 pm
- company / institution: Hygeos
- Location: Lille, France
- Contact:
Re: install error linux centos7
Hello,
Could you clarify which is the command that fails ?
Could you clarify which is the command that fails ?
-
- Posts: 44
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
when i do 'make ' code
- fsteinmetz
- Site Admin
- Posts: 306
- Joined: Fri Sep 07, 2018 1:34 pm
- company / institution: Hygeos
- Location: Lille, France
- Contact:
Re: install error linux centos7
Please try 'make rebuild', and if still fails, send me the complete error message.
-
- Posts: 44
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
(binbin) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% make rebuild
rm -rfv build
removed directory: ‘build/lib.linux-x86_64-3.7/polymer’
removed directory: ‘build/lib.linux-x86_64-3.7’
removed ‘build/temp.linux-x86_64-3.7/build/polymer/clut.o’
removed directory: ‘build/temp.linux-x86_64-3.7/build/polymer’
removed directory: ‘build/temp.linux-x86_64-3.7/build’
removed directory: ‘build/temp.linux-x86_64-3.7’
removed ‘build/polymer/neldermead.html’
removed ‘build/polymer/clut.html’
removed ‘build/polymer/polymer_main.c’
removed ‘build/polymer/fresnel.c’
removed ‘build/polymer/water.html’
removed ‘build/polymer/clut.c’
removed ‘build/polymer/neldermead.c’
removed ‘build/polymer/water.c’
removed ‘build/polymer/polymer_main.html’
removed directory: ‘build/polymer’
removed directory: ‘build’
rm -fv polymer/*.so
auxdata/common/no2_climatology.hdf: OK
auxdata/common/trop_f_no2_200m.hdf: OK
auxdata/common/morel_fq.dat: OK
auxdata/common/AboveRrs_gCoef_w0.dat: OK
auxdata/common/AboveRrs_gCoef_w10.dat: OK
auxdata/common/AboveRrs_gCoef_w5.dat: OK
auxdata/common/aph_bricaud_1995.txt: OK
auxdata/common/aph_bricaud_1998.txt: OK
auxdata/common/morel_buiteveld_bsw.txt: OK
auxdata/common/palmer74.dat: OK
auxdata/common/pope97.dat: OK
auxdata/common/raman_westberry13.txt: OK
auxdata/common/astarmin_average_2015_SLSTR.txt: OK
auxdata/common/astarmin_average.txt: OK
auxdata/common/Matsuoka11_aphy_Table1_JGR.csv: OK
auxdata/common/SOLAR_SPECTRUM_WMO_86: OK
auxdata/common/k_oz.csv: OK
auxdata/generic/LUT.hdf: OK
auxdata/meris/smile/v2/sun_spectral_flux_rr.txt: OK
auxdata/meris/smile/v2/central_wavelen_rr.txt: OK
auxdata/meris/smile/v2/sun_spectral_flux_fr.txt: OK
auxdata/meris/smile/v2/central_wavelen_fr.txt: OK
auxdata/modisa/HMODISA_RSRs.txt: OK
auxdata/seawifs/SeaWiFS_RSRs.txt: OK
auxdata/viirs/VIIRSN_IDPSv3_RSRs.txt: OK
auxdata/msi/S2-SRF_COPE-GSEG-EOPG-TN-15-0007_3.0_S2A.csv: OK
auxdata/msi/S2-SRF_COPE-GSEG-EOPG-TN-15-0007_3.0_S2B.csv: OK
auxdata/oli/Ball_BA_RSR.v1.2.xlsx: OK
python setup.py build_ext --inplace
Compiling polymer/clut.pyx because it changed.
Compiling polymer/neldermead.pyx because it changed.
Compiling polymer/polymer_main.pyx because it changed.
Compiling polymer/water.pyx because it changed.
[1/4] Cythonizing polymer/clut.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[2/4] Cythonizing polymer/neldermead.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/neldermead.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[3/4] Cythonizing polymer/polymer_main.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/polymer_main.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
[4/4] Cythonizing polymer/water.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/water.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
running build_ext
building 'polymer.clut' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/polymer
/opt/modules/centos7/gcc/7.3.0/bin/gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include -I/home/bjiang/.conda/envs/binbin/include/python3.7m -c build/polymer/clut.c -o build/temp.linux-x86_64-3.7/build/polymer/clut.o
In file included from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h0,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/polymer/clut.c:619:
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -shared -B /home/bjiang/.conda/envs/binbin/compiler_compat -L/home/bjiang/.conda/envs/binbin/lib -Wl,-rpath=/home/bjiang/.conda/envs/binbin/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/build/polymer/clut.o -o /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.cpython-37m-x86_64-linux-gnu.so
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /usr/lib/libpthread_nonshared.a
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
make: *** [makefile:9: main] Error 1
(binbin) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% make
python setup.py build_ext --inplace
running build_ext
building 'polymer.clut' extension
/opt/modules/centos7/gcc/7.3.0/bin/gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include -I/home/bjiang/.conda/envs/binbin/include/python3.7m -c build/polymer/clut.c -o build/temp.linux-x86_64-3.7/build/polymer/clut.o
In file included from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h0,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/polymer/clut.c:619:
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -shared -B /home/bjiang/.conda/envs/binbin/compiler_compat -L/home/bjiang/.conda/envs/binbin/lib -Wl,-rpath=/home/bjiang/.conda/envs/binbin/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/build/polymer/clut.o -o /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.cpython-37m-x86_64-linux-gnu.so
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /usr/lib/libpthread_nonshared.a
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
make: *** [makefile:9: main] Error 1
rm -rfv build
removed directory: ‘build/lib.linux-x86_64-3.7/polymer’
removed directory: ‘build/lib.linux-x86_64-3.7’
removed ‘build/temp.linux-x86_64-3.7/build/polymer/clut.o’
removed directory: ‘build/temp.linux-x86_64-3.7/build/polymer’
removed directory: ‘build/temp.linux-x86_64-3.7/build’
removed directory: ‘build/temp.linux-x86_64-3.7’
removed ‘build/polymer/neldermead.html’
removed ‘build/polymer/clut.html’
removed ‘build/polymer/polymer_main.c’
removed ‘build/polymer/fresnel.c’
removed ‘build/polymer/water.html’
removed ‘build/polymer/clut.c’
removed ‘build/polymer/neldermead.c’
removed ‘build/polymer/water.c’
removed ‘build/polymer/polymer_main.html’
removed directory: ‘build/polymer’
removed directory: ‘build’
rm -fv polymer/*.so
auxdata/common/no2_climatology.hdf: OK
auxdata/common/trop_f_no2_200m.hdf: OK
auxdata/common/morel_fq.dat: OK
auxdata/common/AboveRrs_gCoef_w0.dat: OK
auxdata/common/AboveRrs_gCoef_w10.dat: OK
auxdata/common/AboveRrs_gCoef_w5.dat: OK
auxdata/common/aph_bricaud_1995.txt: OK
auxdata/common/aph_bricaud_1998.txt: OK
auxdata/common/morel_buiteveld_bsw.txt: OK
auxdata/common/palmer74.dat: OK
auxdata/common/pope97.dat: OK
auxdata/common/raman_westberry13.txt: OK
auxdata/common/astarmin_average_2015_SLSTR.txt: OK
auxdata/common/astarmin_average.txt: OK
auxdata/common/Matsuoka11_aphy_Table1_JGR.csv: OK
auxdata/common/SOLAR_SPECTRUM_WMO_86: OK
auxdata/common/k_oz.csv: OK
auxdata/generic/LUT.hdf: OK
auxdata/meris/smile/v2/sun_spectral_flux_rr.txt: OK
auxdata/meris/smile/v2/central_wavelen_rr.txt: OK
auxdata/meris/smile/v2/sun_spectral_flux_fr.txt: OK
auxdata/meris/smile/v2/central_wavelen_fr.txt: OK
auxdata/modisa/HMODISA_RSRs.txt: OK
auxdata/seawifs/SeaWiFS_RSRs.txt: OK
auxdata/viirs/VIIRSN_IDPSv3_RSRs.txt: OK
auxdata/msi/S2-SRF_COPE-GSEG-EOPG-TN-15-0007_3.0_S2A.csv: OK
auxdata/msi/S2-SRF_COPE-GSEG-EOPG-TN-15-0007_3.0_S2B.csv: OK
auxdata/oli/Ball_BA_RSR.v1.2.xlsx: OK
python setup.py build_ext --inplace
Compiling polymer/clut.pyx because it changed.
Compiling polymer/neldermead.pyx because it changed.
Compiling polymer/polymer_main.pyx because it changed.
Compiling polymer/water.pyx because it changed.
[1/4] Cythonizing polymer/clut.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[2/4] Cythonizing polymer/neldermead.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/neldermead.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
[3/4] Cythonizing polymer/polymer_main.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/polymer_main.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
[4/4] Cythonizing polymer/water.pyx
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/water.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
running build_ext
building 'polymer.clut' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/polymer
/opt/modules/centos7/gcc/7.3.0/bin/gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include -I/home/bjiang/.conda/envs/binbin/include/python3.7m -c build/polymer/clut.c -o build/temp.linux-x86_64-3.7/build/polymer/clut.o
In file included from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h0,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/polymer/clut.c:619:
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -shared -B /home/bjiang/.conda/envs/binbin/compiler_compat -L/home/bjiang/.conda/envs/binbin/lib -Wl,-rpath=/home/bjiang/.conda/envs/binbin/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/build/polymer/clut.o -o /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.cpython-37m-x86_64-linux-gnu.so
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /usr/lib/libpthread_nonshared.a
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
make: *** [makefile:9: main] Error 1
(binbin) [bjiang@viz3]~/software/pythondepen/polymer-v4.13% make
python setup.py build_ext --inplace
running build_ext
building 'polymer.clut' extension
/opt/modules/centos7/gcc/7.3.0/bin/gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include -I/home/bjiang/.conda/envs/binbin/include/python3.7m -c build/polymer/clut.c -o build/temp.linux-x86_64-3.7/build/polymer/clut.o
In file included from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h0,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/polymer/clut.c:619:
/home/bjiang/.conda/envs/binbin/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -shared -B /home/bjiang/.conda/envs/binbin/compiler_compat -L/home/bjiang/.conda/envs/binbin/lib -Wl,-rpath=/home/bjiang/.conda/envs/binbin/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/build/polymer/clut.o -o /nfs3-home/bjiang/software/pythondepen/polymer-v4.13/polymer/clut.cpython-37m-x86_64-linux-gnu.so
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /lib/libpthread.so.0 when searching for /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /lib/libpthread.so.0
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: skipping incompatible /usr/lib/libpthread_nonshared.a when searching for /usr/lib/libpthread_nonshared.a
/home/bjiang/.conda/envs/binbin/compiler_compat/ld: cannot find /usr/lib/libpthread_nonshared.a
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
make: *** [makefile:9: main] Error 1
- LaurentWandrebeck
- Site Admin
- Posts: 20
- Joined: Fri Sep 07, 2018 1:07 pm
- company / institution: HYGEOS
Re: install error linux centos7
Hello,
It’s likely that you have something wrong when it comes to glibc. I would say you have glibc installed, but i686 version only. And code is being compiled as x86_64. What is strange is that you should have glibc x86_64 installed by default (which provides /lib64/libpthread.so.0). Unless of course you’re running a 32bits OS, but that’s very unlikely nowadays.
Could you please give me:
Thanks,
It’s likely that you have something wrong when it comes to glibc. I would say you have glibc installed, but i686 version only. And code is being compiled as x86_64. What is strange is that you should have glibc x86_64 installed by default (which provides /lib64/libpthread.so.0). Unless of course you’re running a 32bits OS, but that’s very unlikely nowadays.
Could you please give me:
- The operating system and platform you’re compiling on. Most likely or
Code: Select all
cat /etc/redhat-release
andCode: Select all
cat /etc/debian-version
Code: Select all
uname -a
- Version(s) of glibc package(s) installed. If you’re running RHEL or derivatives: If you’re running Debian or derivatives:
Code: Select all
yum list installed | grep glibc
Code: Select all
apt list --installed | grep libc
Thanks,
Laurent Wandrebeck
IT Manager
IT Manager
-
- Posts: 44
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
Dear Laurent Wandrebeck,
Thank you for your help. i follow your code, it still not work.
the code below:
[bjiang@viz3]~/.vnc% cat /etc/redhat-release
CentOS Linux release 7.7.1908 (Core)
[bjiang@viz3]~/.vnc% cat/etc/debian-version
zsh: no such file or directory: cat/etc/debian-version
[bjiang@viz3]~/.vnc% uname -a
Linux viz3.acg.maine.edu 3.10.0-862.9.1.el7.x86_64 #1 SMP Mon Jul 16 16:29:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
[bjiang@viz3]~/.vnc% yum list installed | grep glibc
compat-glibc.x86_64 1:2.12-4.el7.centos @anaconda
compat-glibc-headers.x86_64 1:2.12-4.el7.centos @anaconda
glibc.i686 2.17-292.el7 @base
glibc.x86_64 2.17-292.el7 @base
glibc-common.x86_64 2.17-292.el7 @base
glibc-devel.i686 2.17-292.el7 @base
glibc-devel.x86_64 2.17-292.el7 @base
glibc-headers.x86_64 2.17-292.el7 @base
[bjiang@viz3]~/.vnc%
after that run code "make" same problem as before. Thank you again
Best
Binbin
Thank you for your help. i follow your code, it still not work.
the code below:
[bjiang@viz3]~/.vnc% cat /etc/redhat-release
CentOS Linux release 7.7.1908 (Core)
[bjiang@viz3]~/.vnc% cat/etc/debian-version
zsh: no such file or directory: cat/etc/debian-version
[bjiang@viz3]~/.vnc% uname -a
Linux viz3.acg.maine.edu 3.10.0-862.9.1.el7.x86_64 #1 SMP Mon Jul 16 16:29:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
[bjiang@viz3]~/.vnc% yum list installed | grep glibc
compat-glibc.x86_64 1:2.12-4.el7.centos @anaconda
compat-glibc-headers.x86_64 1:2.12-4.el7.centos @anaconda
glibc.i686 2.17-292.el7 @base
glibc.x86_64 2.17-292.el7 @base
glibc-common.x86_64 2.17-292.el7 @base
glibc-devel.i686 2.17-292.el7 @base
glibc-devel.x86_64 2.17-292.el7 @base
glibc-headers.x86_64 2.17-292.el7 @base
[bjiang@viz3]~/.vnc%
after that run code "make" same problem as before. Thank you again
Best
Binbin
- LaurentWandrebeck
- Site Admin
- Posts: 20
- Joined: Fri Sep 07, 2018 1:07 pm
- company / institution: HYGEOS
Re: install error linux centos7
Dear Binbin,
Things I asked were not meant to solve the problem yet Anyway, it looks like you’re using a non default gcc: /opt/modules/centos7/gcc/7.3.0/bin/gcc (coming from devtoolset probably ?)
That may well be the cause. You probably lack of a glibc package corresponding to that particular version of gcc.
Can you please
And try to compile Polymer with the default compiler (which is /usr/bin/gcc) ?
Thanks !
Things I asked were not meant to solve the problem yet Anyway, it looks like you’re using a non default gcc: /opt/modules/centos7/gcc/7.3.0/bin/gcc (coming from devtoolset probably ?)
That may well be the cause. You probably lack of a glibc package corresponding to that particular version of gcc.
Can you please
Code: Select all
yum install -y gcc
Thanks !
Laurent Wandrebeck
IT Manager
IT Manager
-
- Posts: 44
- Joined: Fri May 22, 2020 7:00 pm
- company / institution: university of maine
- Location: maine
Re: install error linux centos7
Dear Laurent Wandrebeck
Thank you for your help.
when i follow your suggestion, it fails.the code follows:
[bjiang@viz3]~% yum install gcc
Loaded plugins: fastestmirror, langpacks, nvidia
You need to be root to perform this command.
[bjiang@viz3]~% which /usr/bin/gcc
/usr/bin/gcc
Thank you again
Best
Binbin
Thank you for your help.
when i follow your suggestion, it fails.the code follows:
[bjiang@viz3]~% yum install gcc
Loaded plugins: fastestmirror, langpacks, nvidia
You need to be root to perform this command.
[bjiang@viz3]~% which /usr/bin/gcc
/usr/bin/gcc
Thank you again
Best
Binbin
- LaurentWandrebeck
- Site Admin
- Posts: 20
- Joined: Fri Sep 07, 2018 1:07 pm
- company / institution: HYGEOS
Re: install error linux centos7
Could you please give me the output of
If it is a symlink pointing to /opt/modules/centos7/gcc/7.3.0/bin/gcc and you don’t have root access, please ask your system administrator to change default gcc so that system uses by default the system one (not one provided by devtoolset repository or any other).
Thanks
Code: Select all
ll /usr/bin/gcc
Thanks
Laurent Wandrebeck
IT Manager
IT Manager