Polymer installation
Posted: Wed Jul 03, 2019 6:29 pm
Hello,
I am trying to run the command ./polymer_cli.py <level1> <level2> command I get error:
File "./polymer_cli.py", line 11, in <module>
from polymer.main import run_atm_corr, Level1, Level2
File "/polymer/main.py", line 8, in <module>
from polymer.luts import read_mlut_hdf, Idx
File "/polymer/luts.py", line 20, in <module>
from scipy.interpolate import interp1d
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/interpolate/__init__.py", line 175, in <module>
from .interpolate import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/interpolate/interpolate.py", line 32, in <module>
from .interpnd import _ndim_coords_from_arrays
File "interpnd.pyx", line 1, in init scipy.interpolate.interpnd
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/spatial/__init__.py", line 98, in <module>
from .kdtree import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/spatial/kdtree.py", line 8, in <module>
import scipy.sparse
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/__init__.py", line 231, in <module>
from .csr import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/csr.py", line 15, in <module>
from ._sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \
ImportError: /miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/special/../../../../libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/_sparsetools.so)
I have installed all the dependencies using the following commands:
sh install-anaconda-deps.sh
make auxdara_all
make
However, I am unable to run the algorithm. Can someone please suggest something?
Best,
npal
I am trying to run the command ./polymer_cli.py <level1> <level2> command I get error:
File "./polymer_cli.py", line 11, in <module>
from polymer.main import run_atm_corr, Level1, Level2
File "/polymer/main.py", line 8, in <module>
from polymer.luts import read_mlut_hdf, Idx
File "/polymer/luts.py", line 20, in <module>
from scipy.interpolate import interp1d
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/interpolate/__init__.py", line 175, in <module>
from .interpolate import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/interpolate/interpolate.py", line 32, in <module>
from .interpnd import _ndim_coords_from_arrays
File "interpnd.pyx", line 1, in init scipy.interpolate.interpnd
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/spatial/__init__.py", line 98, in <module>
from .kdtree import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/spatial/kdtree.py", line 8, in <module>
import scipy.sparse
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/__init__.py", line 231, in <module>
from .csr import *
File "/miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/csr.py", line 15, in <module>
from ._sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \
ImportError: /miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/special/../../../../libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /miniconda/envs/vir_env/lib/python2.7/site-packages/scipy/sparse/_sparsetools.so)
I have installed all the dependencies using the following commands:
sh install-anaconda-deps.sh
make auxdara_all
make
However, I am unable to run the algorithm. Can someone please suggest something?
Best,
npal